Aliases : PAB8, PABP8, Zm00001e033592
Description : mRNA poly-A-tail binding factor (PABP)
Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e033592_P004 | |
Cluster | HCCA: Cluster_71 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G49760 | PAB8, PABP8 | poly(A) binding protein 8 | 0.07 | OrthoFinder output from all 47 species | |
AT2G23350 | PABP4, PAB4 | poly(A) binding protein 4 | 0.09 | OrthoFinder output from all 47 species | |
Adi_g096819 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g13165 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0060.g034731 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G016700.1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021244.19 | PAB2, PABP2, ATPAB2 | Protein biosynthesis.translation initiation.mRNA... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021244.20 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.01 | OrthoFinder output from all 47 species | |
Dde_g51529 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01009455001 | PAB8, PABP8 | Protein biosynthesis.translation initiation.mRNA... | 0.04 | OrthoFinder output from all 47 species | |
Gb_00731 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g22354.1 | PAB2, PABP2,... | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g02700.1 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.06 | OrthoFinder output from all 47 species | |
MA_111003g0010 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g18970.1 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor (PABP) | 0.06 | OrthoFinder output from all 47 species | |
Nbi_g14035 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g25597 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0157.g023696 | PAB8, PABP8 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g107870.3.1 | PAB8, PABP8,... | mRNA poly-A-tail binding factor (PABP) | 0.04 | OrthoFinder output from all 47 species | |
Spa_g41229 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g14974 | PAB2, PABP2, ATPAB2 | mRNA poly-A-tail binding factor *(PABP) & original... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
No external refs found! |