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  5. Zm00001e033170_P001

Zm00001e033170_P001 (ATRABE1C, ATRAB8A,...)


Aliases : ATRABE1C, ATRAB8A, ARA-3, RAB8A, ARA3, Zm00001e033170

Description : E-class RAB GTPase


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033170_P001
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Adi_g004291 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30318 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G011900.1 ATRABE1D,... E-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000983.30 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Dcu_g37268 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22475 ATRABE1E, ATRAB8E, RABE1e E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25309 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.06 OrthoFinder output from all 47 species
LOC_Os03g60530.1 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os05g38630.2 ATRABE1C,... E-class RAB GTPase 0.04 OrthoFinder output from all 47 species
LOC_Os07g13530.1 LOC_Os07g13530 E-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Msp_g05932 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000647 ATRABE1D,... not classified & original description: CDS=1-615 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564 ATRABE1C,... not classified & original description: CDS=148-741 0.03 OrthoFinder output from all 47 species
Sam_g39848 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 178
No external refs found!