LOC_Os04g05050 (Os04g0137201)


Aliases : Os04g0137201

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g05050
Cluster HCCA cluster: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT4G13210 No alias Pectin lyase-like superfamily protein 0.05 Gene family
AT4G13710 No alias Pectin lyase-like superfamily protein 0.04 Gene family
AT5G15110 No alias Pectate lyase family protein 0.02 Gene family
AT5G55720 No alias Pectin lyase-like superfamily protein 0.06 Gene family
AT5G63180 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01003984001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01014682001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01028548001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01029048001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
MA_10430145g0030 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_203992g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
MA_97947g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Smo407495 PACid_15419124 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc02g093580.3.1 Solyc02g093580.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Solyc09g091430.3.1 Solyc09g091430.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 207 388
No external refs found!