Zm00001e032388_P001 (NFD1, Zm00001e032388)


Aliases : NFD1, Zm00001e032388

Description : component mtRPL21 of large ribosomal subunit proteome


Gene families : OG0004500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004500_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032388_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00183630 NFD1,... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT4G30930 NFD1 Ribosomal protein L21 0.12 OrthoFinder output from all 47 species
Adi_g007322 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Adi_g007323 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g15586 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000513 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.36G065300.1 NFD1, Ceric.36G065300 component *(bL21m) of large mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001371.5 No alias 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre09.g388550 NFD1 No description available 0.05 OrthoFinder output from all 47 species
Dcu_g14758 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Gb_38840 NFD1 component mtRPL21 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os05g48410.1 NFD1, LOC_Os05g48410 component mtRPL21 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Len_g08614 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Mp6g04500.1 NFD1 component mtRPL21 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Nbi_g34048 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002071 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g13356 No alias component *(bL21m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo410329 NFD1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Solyc02g078200.4.1 NFD1, Solyc02g078200 component mtRPL21 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Tin_g21386 NFD1 component *(bL21m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR028909 L21p-like 137 237
No external refs found!