Aliases : NFD1, Zm00001e032388
Description : component mtRPL21 of large ribosomal subunit proteome
Gene families : OG0004500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004500_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e032388_P001 | |
Cluster | HCCA: Cluster_71 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00068p00183630 | NFD1,... | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
AT4G30930 | NFD1 | Ribosomal protein L21 | 0.12 | OrthoFinder output from all 47 species | |
Adi_g007322 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g007323 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g15586 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000513 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.36G065300.1 | NFD1, Ceric.36G065300 | component *(bL21m) of large mitoribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001371.5 | No alias | 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre09.g388550 | NFD1 | No description available | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g14758 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Gb_38840 | NFD1 | component mtRPL21 of large ribosomal subunit proteome | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os05g48410.1 | NFD1, LOC_Os05g48410 | component mtRPL21 of large ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
Len_g08614 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Mp6g04500.1 | NFD1 | component mtRPL21 of large ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g34048 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0004.g002071 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g13356 | No alias | component *(bL21m) of large mitoribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Smo410329 | NFD1 | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g078200.4.1 | NFD1, Solyc02g078200 | component mtRPL21 of large ribosomal subunit proteome | 0.09 | OrthoFinder output from all 47 species | |
Tin_g21386 | NFD1 | component *(bL21m) of large mitoribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005840 | ribosome | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043233 | organelle lumen | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR028909 | L21p-like | 137 | 237 |
No external refs found! |