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  5. Zm00001e032325_P001

Zm00001e032325_P001 (EDF2, AtRAV2, TEM2,...)


Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8, Zm00001e032325

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032325_P001
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 OrthoFinder output from all 47 species
AT1G25560 TEM1, EDF1 AP2/B3 transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
AT2G46870 NGA1 AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.07 OrthoFinder output from all 47 species
Adi_g058439 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Adi_g058440 EDF3 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Adi_g114045 NGA1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g32030 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Aev_g44854 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ala_g04648 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ala_g04649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17658 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Als_g20506 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.01 OrthoFinder output from all 47 species
Aob_g11266 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044523 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Cba_g71540 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G039200.1 EDF4, RAV1,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ceric.20G072500.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Dac_g39956 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Dac_g43760 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g04025 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dde_g25414 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g16987 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01023582001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01036447001 EDF4, RAV1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
Gb_18035 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
LOC_Os01g04750.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
LOC_Os01g04800.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os01g49830.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
LOC_Os04g49230.1 LOC_Os04g49230 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os05g47650.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os06g01860.1 LOC_Os06g01860 transcription factor (RAV/NGATHA) 0.06 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.06 OrthoFinder output from all 47 species
LOC_Os10g39190.1 NGA1, LOC_Os10g39190 transcription factor (RAV/NGATHA) 0.07 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Len_g14264 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Len_g36994 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Len_g48063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21540 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436315g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
MA_116574g0010 EDF3 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
MA_3834g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_5039g0010 NGA1 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
MA_70029g0010 NGA1 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
MA_865117g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Mp2g22250.1 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Msp_g47465 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g09403 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Sam_g30092 No alias AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g007000.2.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Solyc05g004000.1.1 NGA1, Solyc05g004000 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Solyc05g009790.1.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Solyc08g013690.1.1 NGA3, Solyc08g013690 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Solyc08g013700.1.1 NGA3, Solyc08g013700 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Solyc10g083210.2.1 Solyc10g083210 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Spa_g28812 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.05 OrthoFinder output from all 47 species
Spa_g29371 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Tin_g30531 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e000156_P001 NGA3, Zm00001e000156 transcription factor (RAV/NGATHA) 0.01 OrthoFinder output from all 47 species
Zm00001e026443_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 OrthoFinder output from all 47 species
Zm00001e039393_P002 Zm00001e039393 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e041372_P001 NGA1, Zm00001e041372 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 72 120
IPR003340 B3_DNA-bd 206 312
No external refs found!