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  5. Zm00001e031356_P001

Zm00001e031356_P001 (MYB3R-1, ATMYB3R1,...)


Aliases : MYB3R-1, ATMYB3R1, PC-MYB1, MYB3R1, ATMYB3R-1, Zm00001e031356

Description : transcription factor (MYB)


Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031356_P001
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00252990 AtMYB124,... RNA biosynthesis.transcriptional activation.MYB... 0.05 OrthoFinder output from all 47 species
AMTR_s00109p00061950 MYB3R-1,... RNA biosynthesis.transcriptional activation.MYB... 0.07 OrthoFinder output from all 47 species
AT5G11510 AtMYB3R4, MYB3R-4 myb domain protein 3r-4 0.06 OrthoFinder output from all 47 species
Aev_g16421 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14220 MYB3R-3, AtMYB3R3 R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12966 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0179.g056258 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.33G050100.1 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001042.7 MYB1, AtMYB1 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Cre09.g399067 AtMYB109, MYB109 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Dac_g04675 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12641 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g05787 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01035663001 MYB3R-1,... RNA biosynthesis.transcriptional activation.MYB... 0.05 OrthoFinder output from all 47 species
LOC_Os07g43420.1 AtMYB124,... transcription factor (MYB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g13570.1 MYB3R-1,... transcription factor (MYB) 0.06 OrthoFinder output from all 47 species
Len_g27982 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56915 MYB88, AtMYB88 MYB class-R2R3 transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20543 ATMYB3R5, MYB3R-5 R1R2R3-MYB transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g44400 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02270 AtMYB124, MYB124, FLP MYB class-R2R3 transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10936 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g08219 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18972 MYB1, AtMYB1 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015735 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Solyc08g080580.4.1 MYB3R-1,... transcription factor (MYB) 0.03 OrthoFinder output from all 47 species
Solyc11g071300.2.1 MYB3R-1,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Tin_g12262 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 101 147
IPR001005 SANT/Myb 153 195
IPR001005 SANT/Myb 49 95
No external refs found!