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  5. Zm00001e031154_P002

Zm00001e031154_P002 (U1A, Zm00001e031154)


Aliases : U1A, Zm00001e031154

Description : component U1A of U1 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031154_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00113610 U2B'',... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
AT2G47580 U1A spliceosomal protein U1A 0.07 OrthoFinder output from all 47 species
Adi_g006853 No alias component *(U2B) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052796 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11070 No alias component *(U2B) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03611 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.87 No alias U2 small nuclear ribonucleoprotein B OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.24 U2B'' RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre13.g566700 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Len_g01680 No alias component *(U2B) of U2 snRNP complex & original description: none 0.04 OrthoFinder output from all 47 species
MA_271027g0010 U2B'' U2 small nuclear ribonucleoprotein B OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp5g12580.1 No alias component U1A of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species
Msp_g00949 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g04288 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26031 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Smo409510 U2B'' RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc09g075200.4.1 U1A, Solyc09g075200 component U1A of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 182 243
IPR000504 RRM_dom 24 94
No external refs found!