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  5. Zm00001e030991_P001

Zm00001e030991_P001 (Zm00001e030991)


Aliases : Zm00001e030991

Description : no hits & (original description: none)


Gene families : OG0000509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030991_P001
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00117p00057980 RIN4,... External stimuli response.biotic stress.pathogen... 0.05 OrthoFinder output from all 47 species
Adi_g024075 NOI regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Ala_g04105 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Als_g02908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024237 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.03 OrthoFinder output from all 47 species
Cba_g05087 RIN4 regulatory factor *(RIN4) guarded by RPM1/RPS2... 0.02 OrthoFinder output from all 47 species
Ceric.28G064600.1 Ceric.28G064600 not classified & original description: pacid=50570618... 0.02 OrthoFinder output from all 47 species
Ceric.28G064700.1 Ceric.28G064700 not classified & original description: pacid=50570623... 0.04 OrthoFinder output from all 47 species
Dcu_g19989 NOI not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011890 No alias not classified & original description: CDS=1-576 0.03 OrthoFinder output from all 47 species
Solyc07g045340.4.1 Solyc07g045340 no description available(sp|o22633|noi4_arath : 84.3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008700 TypeIII_avirulence_cleave 4 38
No external refs found!