Zm00001e030989_P001 (Zm00001e030989)


Aliases : Zm00001e030989

Description : cohesin cofactor (PDS5)


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030989_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.05 OrthoFinder output from all 47 species
AT1G80810 No alias Tudor/PWWP/MBT superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.05 OrthoFinder output from all 47 species
AT5G47690 No alias binding 0.1 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g06182 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g18795 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g20243 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g24101 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03900 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g69987 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene00716.t1 Aspi01Gene00716 cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04214.t1 Aspi01Gene04214 cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50191.t1 Aspi01Gene50191 cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013139 No alias cohesin cofactor *(PDS5) & original description: CDS=60-4409 0.05 OrthoFinder output from all 47 species
Azfi_s0076.g037833 No alias cohesin cofactor *(PDS5) & original description: CDS=1-5502 0.03 OrthoFinder output from all 47 species
Azfi_s0310.g064146 No alias cohesin cofactor *(PDS5) & original description: CDS=585-5357 0.03 OrthoFinder output from all 47 species
Cba_g04527 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.16 OrthoFinder output from all 47 species
Dac_g22018 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14818 No alias cohesin cofactor *(PDS5) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g36421 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09843 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10056 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02974 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g14145 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25801 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.13 OrthoFinder output from all 47 species
GSVIVT01008876001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Gb_02487 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Gb_06732 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Gb_09525 No alias cohesin cofactor (PDS5) 0.06 OrthoFinder output from all 47 species
Gb_12481 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os02g39920.1 LOC_Os02g39920 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.14 OrthoFinder output from all 47 species
Len_g21353 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g46602 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g10229 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10240847g0010 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
MA_10426926g0010 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.08 OrthoFinder output from all 47 species
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
MA_180523g0010 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
MA_214607g0010 No alias cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
MA_523g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Msp_g25546 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g25803 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18971 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28747 No alias cohesin cofactor *(PDS5) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g02532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04827 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44286 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g16328 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20541 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28581 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36032 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020186 No alias exoribonuclease *(SOV) & original description: CDS=109-2307 0.04 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24524 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g36827 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.06 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.11 OrthoFinder output from all 47 species
Spa_g09270 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g09451 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!