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  5. Zm00001e030803_P001

Zm00001e030803_P001 (Zm00001e030803)


Aliases : Zm00001e030803

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 126.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030803_P001
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT1G60360 No alias RING/U-box superfamily protein 0.12 OrthoFinder output from all 47 species
Adi_g017038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05631 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.16G037300.1 Ceric.16G037300 not classified & original description: pacid=50589925... 0.04 OrthoFinder output from all 47 species
Ehy_g02398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g52870.1 LOC_Os02g52870 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
MA_19897g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_289134g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
MA_413614g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13924 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03817 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g23756 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g52386 No alias E3 ubiquitin ligase *(SNIPER) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08830 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 206 248
IPR039525 RNF126-like_zinc-ribbon 24 57
No external refs found!