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  5. Zm00001e030465_P001

Zm00001e030465_P001 (PBC1, Zm00001e030465)


Aliases : PBC1, Zm00001e030465

Description : component beta type-3 of 26S proteasome


Gene families : OG0004036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030465_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G21720 PBC1 proteasome beta subunit C1 0.06 OrthoFinder output from all 47 species
AT1G77440 PBC2 20S proteasome beta subunit C2 0.06 OrthoFinder output from all 47 species
Adi_g018669 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Adi_g039491 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aev_g00417 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aob_g01174 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00275 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Azfi_s0008.g011490 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cba_g26177 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.13G038700.1 PBC1, Ceric.13G038700 beta-type-3 component *(PBC) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Cre06.g267500 PBC1 Protein degradation.26S proteasome.20S core... 0.09 OrthoFinder output from all 47 species
Dcu_g35364 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Dde_g03144 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ehy_g03351 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
GSVIVT01008836001 PBC1 Protein degradation.26S proteasome.20S core... 0.08 OrthoFinder output from all 47 species
Gb_09326 PBC1 component beta type-3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Gb_29749 PBC1 component beta type-3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
LOC_Os02g08520.1 PBC1, LOC_Os02g08520 component beta type-3 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os06g43570.1 PBC1, LOC_Os06g43570 component beta type-3 of 26S proteasome 0.08 OrthoFinder output from all 47 species
Len_g24778 PBC2 beta-type-3 component *(PBC) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Lfl_g00669 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
MA_70161g0010 PBC1 component beta type-3 of 26S proteasome 0.02 OrthoFinder output from all 47 species
MA_9526163g0010 PBC1 component beta type-3 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Mp7g15370.1 PBC1 component beta type-3 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Msp_g01419 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Pir_g06584 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pnu_g27114 PBC1 beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sam_g18317 No alias beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Sam_g51100 No alias beta-type-3 component *(PBC) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Solyc04g009410.3.1 PBC1, Solyc04g009410 component beta type-3 of 26S proteasome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 7 187
No external refs found!