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  5. Zm00001e029651_P001

Zm00001e029651_P001 (Zm00001e029651)


Aliases : Zm00001e029651

Description : component RPA1 of single-stranded-DNA binding RPA complex. component RPA1 of RPA presynaptic filament assembly factor complex


Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029651_P001
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT2G06510 ATRPA70A, RPA1A,... replication protein A 1A 0.03 OrthoFinder output from all 47 species
Als_g07746 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Aspi01Gene49949.t1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ceric.07G018700.1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.18 No alias Replication protein A 70 kDa DNA-binding subunit E... 0.02 OrthoFinder output from all 47 species
LOC_Os02g53680.1 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species
MA_217423g0010 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0107.g020372 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 286 372
IPR013955 Rep_factor-A_C 555 704
IPR031657 REPA_OB_2 396 500
IPR001878 Znf_CCHC 827 842
IPR007199 Rep_factor-A_N 5 105
No external refs found!