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  5. Zm00001e028928_P001

Zm00001e028928_P001 (Zm00001e028928)


Aliases : Zm00001e028928

Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028928_P001
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g65574 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44683.t1 Aspi01Gene44683 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G043200.1 Ceric.14G043200 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Gb_02248 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.03 OrthoFinder output from all 47 species
Len_g13617 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019058 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1206 0.04 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 155 335
No external refs found!