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  5. Zm00001e028371_P001

Zm00001e028371_P001 (AtATG18a, Zm00001e028371)


Aliases : AtATG18a, Zm00001e028371

Description : component ATG18 of autophagosome ATG9-2-18 membrane shuttling complex


Gene families : OG0000802 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028371_P001

Target Alias Description ECC score Gene Family Method Actions
AT3G62770 AtATG18a Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aop_g05929 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Azfi_s0329.g065324 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Ceric.10G069800.1 ATG18D,... component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Cre10.g425750 AtATG18a Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.01 OrthoFinder output from all 47 species
Ehy_g01095 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01010945001 AtATG18a Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.04 OrthoFinder output from all 47 species
LOC_Os01g07400.1 ATG18D,... component ATG18 of autophagosome ATG9-2-18 membrane... 0.07 OrthoFinder output from all 47 species
Len_g21184 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Lfl_g06993 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Mp1g05420.1 AtATG18a component ATG18 of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Msp_g15254 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.01 OrthoFinder output from all 47 species
Nbi_g07490 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Nbi_g11717 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Pir_g18881 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.01 OrthoFinder output from all 47 species
Ppi_g29773 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Solyc06g048510.4.1 ATG18D,... component ATG18 of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species
Spa_g04557 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Spa_g16774 ATG18C, ATATG18C component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 261 289
IPR001680 WD40_repeat 307 338
No external refs found!