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  5. Zm00001e028338_P001

Zm00001e028338_P001 (Zm00001e028338)


Aliases : Zm00001e028338

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 109.0)


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028338_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g024000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g040822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0226.g058986 No alias not classified & original description: CDS=214-2052 0.02 OrthoFinder output from all 47 species
Ceric.01G051600.1 Ceric.01G051600 not classified & original description: pacid=50592490... 0.03 OrthoFinder output from all 47 species
Ceric.27G020300.1 Ceric.27G020300 not classified & original description: pacid=50605628... 0.03 OrthoFinder output from all 47 species
Ceric.31G061400.1 Ceric.31G061400 not classified & original description: pacid=50575101... 0.03 OrthoFinder output from all 47 species
Ceric.39G011900.1 Ceric.39G011900 not classified & original description: pacid=50583491... 0.02 OrthoFinder output from all 47 species
Dde_g02841 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10033 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g40752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g090910.3.1 Solyc02g090910 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g15398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01889 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 94 154
IPR000504 RRM_dom 5 63
IPR000504 RRM_dom 229 286
No external refs found!