Zm00001e028111_P001 (EDF2, AtRAV2, TEM2,...)

Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8, Zm00001e028111

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e028111_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AT1G68840	EDF2, AtRAV2,...	related to ABI3/VP1 2	0.04	OrthoFinder output from all 47 species
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.05	OrthoFinder output from all 47 species
Adi_g114045	NGA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g44854	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Ala_g04648	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.05	OrthoFinder output from all 47 species
Ala_g04649	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g17658	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Aob_g11266	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Dac_g22480	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Dde_g48458	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g02670	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01011947001	EDF2, AtRAV2,...	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01033902001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01036447001	EDF4, RAV1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.06	OrthoFinder output from all 47 species
LOC_Os01g49830.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.06	OrthoFinder output from all 47 species
LOC_Os05g47650.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
LOC_Os06g01860.1	LOC_Os06g01860	transcription factor (RAV/NGATHA)	0.05	OrthoFinder output from all 47 species
LOC_Os08g06120.1	NGA1, LOC_Os08g06120	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
LOC_Os10g39190.1	NGA1, LOC_Os10g39190	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
LOC_Os11g05740.1	LOC_Os11g05740	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Lfl_g21540	NGA1	RAV/NGATHA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436315g0010	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
MA_23673g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
MA_246350g0010	EDF4, RAV1	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
MA_70029g0010	NGA1	transcription factor (RAV/NGATHA)	0.06	OrthoFinder output from all 47 species
MA_865117g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	OrthoFinder output from all 47 species
Ore_g44549	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Pir_g49278	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.05	OrthoFinder output from all 47 species
Pnu_g09403	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Sam_g30092	No alias	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Solyc04g007000.2.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Solyc05g004000.1.1	NGA1, Solyc05g004000	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Solyc05g009790.1.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.06	OrthoFinder output from all 47 species
Solyc08g013690.1.1	NGA3, Solyc08g013690	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Solyc10g083210.2.1	Solyc10g083210	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Tin_g30531	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e000156_P001	NGA3, Zm00001e000156	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Zm00001e040214_P001	NGA3, Zm00001e040214	transcription factor (RAV/NGATHA)	0.04	OrthoFinder output from all 47 species
Zm00001e041372_P001	NGA1, Zm00001e041372	transcription factor (RAV/NGATHA)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	216	318
IPR001471	AP2/ERF_dom	81	129

External Links

No external refs found!

Zm00001e028111_P001 (EDF2, AtRAV2, TEM2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation