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Aliases : ATSS4, SS4, SSIV, Zm00001e027473
Description : starch synthase (SSIV)
Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e027473_P001 | |
| Cluster | HCCA: Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00214840 | ATSS4, SS4,... | Probable starch synthase 4, chloroplastic/amyloplastic... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00037p00164200 | ATSS3, SS3,... | Carbohydrate metabolism.starch... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g05532 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g25563 | ATSS4, SS4, SSIV | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12175 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g13690 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g05131 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g02255 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aop_g05284 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aspi01Gene43820.t1 | ATSS4, SS4,... | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0003.g007652 | ATSS3, SS3 | starch synthase *(SS3) & original description: CDS=201-2645 | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g33306 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G125000.1 | ATSS4, SS4,... | starch synthase *(SS4) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G020900.1 | ATSS3, SS3,... | starch synthase *(SS3) & original description:... | 0.12 | OrthoFinder output from all 47 species | |
| Cre13.g579598 | ATSS3, SS3 | Carbohydrate metabolism.starch... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g10971 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g01991 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g14950 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50824 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g20658 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g53310.1 | ATSS3, SS3,... | starch synthase (SSIII) | 0.1 | OrthoFinder output from all 47 species | |
| Len_g30585 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Len_g49747 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g04240 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g14910.1 | ATSS4, SS4, SSIV | starch synthase (SSIV) | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g08030.1 | ATSS4, SS4, SSIV | Probable starch synthase 4, chloroplastic/amyloplastic... | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g20000.1 | ATSS3, SS3 | starch synthase (SSIII) | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25353 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g02313 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c9_14980V3.1 | ATSS4, SS4,... | starch synthase 4 | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g07616 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g39876 | ATSS4, SS4, SSIV | starch synthase *(SS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g43473 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g51042 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Smo154776 | ATSS3, SS3 | Carbohydrate metabolism.starch... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g071040.3.1 | ATSS4, SS4,... | starch synthase (SSIV) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g080570.3.1 | ATSS3, SS3,... | starch synthase (SSIII) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g10367 | ATSS4, SS4, SSIV | starch synthase *(SS4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g17570 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g19651 | ATSS3, SS3 | starch synthase *(SS3) & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| MF | GO:2001070 | starch binding | IEP | HCCA |
| No external refs found! |