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  5. Zm00001e027291_P001

Zm00001e027291_P001 (PRA1.B1, Zm00001e027291)


Aliases : PRA1.B1, Zm00001e027291

Description : B-G-class Rab-GDF protein


Gene families : OG0000542 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027291_P001
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT5G07110 PRA1.B6 prenylated RAB acceptor 1.B6 0.03 OrthoFinder output from all 47 species
Adi_g007847 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G057500.1 PRA1.B4, Ceric.02G057500 B-G-class Rab-GDF protein & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.15G073700.1 PRA1.B2, Ceric.15G073700 B-G-class Rab-GDF protein & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.29G080600.1 PRA1.B5, Ceric.29G080600 B-G-class Rab-GDF protein & original description:... 0.04 OrthoFinder output from all 47 species
Msp_g02685 PRA1.B2 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06102 PRA1.B1 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014691 PRA1.B2 B-G-class Rab-GDF protein & original description: CDS=1-618 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0186.g025049 PRA1.B3 B-G-class Rab-GDF protein & original description: CDS=1-630 0.02 OrthoFinder output from all 47 species
Spa_g10214 PRA1.B5 B-G-class Rab-GDF protein & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012065_P001 PRA1.E, Zm00001e012065 B-G-class Rab-GDF protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 51 193
No external refs found!