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Aliases : Zm00001e026661
Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum (sp|q9sq56|rgga_tobac : 112.0)
Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00013p00244720 | evm_27.TU.AmTr_v1... | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00111p00140620 | evm_27.TU.AmTr_v1... | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.03 | OrthoFinder output from all 47 species | |
| AT4G17520 | No alias | Hyaluronan / mRNA binding family | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g025028 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g060796 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g117738 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g117740 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g30074 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010039 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G019400.1 | Ceric.01G019400 | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.19G044900.1 | Ceric.19G044900 | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G035000.1 | Ceric.30G035000 | regulatory protein *(RGG) of mRNA quality control &... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g01517 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01002125001 | No alias | RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g41880.1 | LOC_Os01g41880 | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os01g52390.1 | LOC_Os01g52390 | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os05g45660.2 | LOC_Os05g45660 | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g13516 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428060g0020 | No alias | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_9567870g0010 | No alias | RGG repeats nuclear RNA binding protein A (Fragment)... | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g10018 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09170 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g04627 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g32317 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g46771 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g09394 | No alias | regulatory protein *(RGG) of mRNA quality control &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g090190.3.1 | Solyc01g090190 | RGG repeats nuclear RNA binding protein A OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |