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  5. Zm00001e026209_P003

Zm00001e026209_P003 (Zm00001e026209)


Aliases : Zm00001e026209

Description : RING-v-class E3 ligase


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026209_P003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00203490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g074839 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0591.g078731 No alias not classified & original description: CDS=293-1048 0.02 OrthoFinder output from all 47 species
Azfi_s1957.g108376 No alias E3 ubiquitin ligase & original description: CDS=1-984 0.01 OrthoFinder output from all 47 species
Cba_g77375 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G021200.1 Ceric.23G021200 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g09799 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06352 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08222 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
GSVIVT01032601001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g28730.1 LOC_Os05g28730 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g05288 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08617 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15643 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_217767g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g010979 No alias E3 ubiquitin ligase & original description: CDS=450-1109 0.01 OrthoFinder output from all 47 species
Solyc04g007600.4.1 Solyc04g007600 RING-v-class E3 ligase 0.01 OrthoFinder output from all 47 species
Solyc08g014080.4.1 Solyc08g014080 RING-v-class E3 ligase 0.08 OrthoFinder output from all 47 species
Tin_g07520 No alias E3 ubiquiTin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e021220_P001 Zm00001e021220 RING-v-class E3 ligase 0.01 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e031477_P002 Zm00001e031477 RING-v-class E3 ligase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 112 159
IPR022143 DUF3675 166 286
No external refs found!