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  5. Zm00001e026127_P004

Zm00001e026127_P004 (Zm00001e026127)


Aliases : Zm00001e026127

Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 173.0)


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026127_P004
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
AT1G51580 No alias RNA-binding KH domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g012562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g092270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g128615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g71670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.02G052900.1 Ceric.02G052900 not classified & original description: pacid=50583938... 0.02 OrthoFinder output from all 47 species
Ceric.17G032000.1 Ceric.17G032000 regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038571001 No alias RNA-binding KH domain-containing protein RCF3... 0.07 OrthoFinder output from all 47 species
LOC_Os03g25970.1 LOC_Os03g25970 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os09g32300.1 LOC_Os09g32300 KH domain-containing protein HEN4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g21587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_71572g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g05364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016541 No alias not classified & original description: CDS=278-2203 0.02 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Solyc03g082980.3.1 Solyc03g082980 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Spa_g26299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g36753 PEP not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 47 100
IPR004088 KH_dom_type_1 464 531
IPR004088 KH_dom_type_1 235 301
IPR004088 KH_dom_type_1 380 431
IPR004088 KH_dom_type_1 632 695
No external refs found!