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Aliases : AGO4, OCP11, Zm00001e025496
Description : siRNA-integrating factor (AGO)
Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G31280 | AGO2 | Argonaute family protein | 0.03 | OrthoFinder output from all 47 species | |
| AT2G27880 | AGO5 | Argonaute family protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G21030 | No alias | PAZ domain-containing protein / piwi domain-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G21150 | AGO9 | Argonaute family protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g016083 | PNH, AGO10, ZLL | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g089102 | AGO1 | regulatory protein *(AGO7) of transacting siRNA pathway... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g114845 | AGO1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g29550 | AGO1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene18541.t1 | AGO1, Aspi01Gene18541 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.16G078000.1 | PNH, AGO10, ZLL,... | not classified & original description: pacid=50589285... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G040900.1 | AGO4, OCP11,... | siRNA-integrating factor *(AGO) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g22733 | AGO1 | miRNA recruiting factor (AGO) of RNA-induced silencing... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g06133 | AGO1 | miRNA recruiting factor (AGO) of RNA-induced silencing... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01037488001 | AGO4, OCP11 | Chromatin organisation.DNA methylation.canonical... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g16870.3 | AGO4, OCP11,... | siRNA-integrating factor (AGO) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g06770.2 | AGO4, OCP11,... | siRNA-integrating factor (AGO) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g47870.1 | AGO1, LOC_Os04g47870 | RIS-Complex miRNA recruiting factor (AGO1) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g52540.1 | AGO2, LOC_Os04g52540 | siRNA-binding factor (AGO2) of non-canonical RdDM pathway | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g39640.1 | PNH, AGO10, ZLL,... | RIS-Complex miRNA recruiting factor (AGO1) | 0.02 | OrthoFinder output from all 47 species | |
| MA_246308g0010 | AGO9 | Protein argonaute 7 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g11818 | AGO4, OCP11 | siRNA-integrating factor *(AGO) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g20845 | PNH, AGO10, ZLL | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g14534 | AGO1 | regulatory protein *(AGO7) of transacting siRNA pathway... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0018.g007503 | AGO1 | not classified & original description: CDS=68-2746 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g069260.3.1 | AGO2, Solyc02g069260 | siRNA-binding factor (AGO2) of non-canonical RdDM pathway | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g09278 | AGO1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51306 | AGO1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g57163 | AGO1 | regulatory protein *(AGO7) of transacting siRNA pathway... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| No external refs found! |