LOC_Os03g58050 (Os03g0794700)

Aliases : Os03g0794700

Description : protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18 encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex S18 ribosomal protein (RPS18C)

Gene families : OG_01_0002586 (Gene family) Phylogenetic Tree(s): OG0002586_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os03g58050
Cluster HCCA cluster: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AT1G22780 RPS18A, PFL, PFL1 Ribosomal protein S13/S18 family 0.35 Gene family
AT1G34030 No alias Ribosomal protein S13/S18 family 0.27 Gene family
AT4G09800 RPS18C S18 ribosomal protein 0.09 Gene family
Cre06.g272950 No alias protein.synthesis.ribosomal... 0.39 Gene family
GSVIVT01017975001 No alias protein.synthesis.ribosomal... 0.19 Gene family
GSVIVT01034582001 No alias protein.synthesis.ribosomal... 0.1 Gene family
LOC_Os07g07709 Os07g0173501 protein.synthesis.ribosomal... 0.06 Gene family
MA_10429265g0010 No alias protein.synthesis.ribosomal... 0.09 Gene family
MA_10431843g0010 No alias protein.synthesis.ribosomal... 0.03 Gene family
Smo267619 PACid_15412728 No description available 0.14 Gene family
Solyc03g078290.3.1 Solyc03g078290.3 protein.synthesis.ribosomal... 0.32 Gene family
Solyc06g073370.3.1 Solyc06g073370.3 protein.synthesis.ribosomal... 0.28 Gene family
Solyc11g005680.2.1 Solyc11g005680.2 protein.synthesis.ribosomal... 0.17 Gene family
Zm00001d013086 GRMZM2G130544 protein.synthesis.ribosomal... 0.4 Gene family
Zm00001d034422 GRMZM2G178341 protein.synthesis.ribosomal... 0.36 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan
MF GO:0003735 structural constituent of ribosome IEA InterProScan
CC GO:0005622 intracellular IEA InterProScan
CC GO:0005840 ribosome IEA InterProScan
BP GO:0006412 translation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!