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  5. Zm00001e024990_P001

Zm00001e024990_P001 (Zm00001e024990)


Aliases : Zm00001e024990

Description : R-loop reader protein (ALBA1/2)


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024990_P001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AT1G29250 No alias Alba DNA/RNA-binding protein 0.04 OrthoFinder output from all 47 species
Adi_g044986 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G088300.1 Ceric.06G088300 R-loop reader protein *(ALBA1/2) & original description:... 0.1 OrthoFinder output from all 47 species
Dac_g04462 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05206 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50080 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017289001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
LOC_Os02g10810.1 LOC_Os02g10810 R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species
Lfl_g23884 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g00164 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g24068 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09152 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55877 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e016750_P002 Zm00001e016750 R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 30 83
No external refs found!