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  5. Zm00001e024978_P001

Zm00001e024978_P001 (ABCG40, PDR12,...)


Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, Zm00001e024978

Description : subfamily ABCG transporter


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024978_P001

Target Alias Description ECC score Gene Family Method Actions
Als_g18808 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g23935 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27569 ABCG40, PDR12,... subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20545 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01661.t1 ABCG40, PDR12,... subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19030 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g33444 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57880 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000270.11 PDR1, ATPDR1 ABC transporter G family member 38 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020892.22 ATPDR7, PDR7 ABC transporter G family member 51 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Cre09.g395750 ATPDR3, PDR3 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
GSVIVT01035715001 PDR4, ATPDR4 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
LOC_Os01g42380.1 ABCG40, PDR12,... subfamily ABCG transporter 0.07 OrthoFinder output from all 47 species
LOC_Os02g11760.1 ABCG40, PDR12,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
MA_10427561g0020 ABCG40, PDR12,... ABC transporter G family member 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_18770g0010 ABCG40, PDR12,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Msp_g35358 PDR1, ATPDR1 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14833 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g62897 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009392 ABCG40, PDR12,... subfamily ABCG transporter & original description: CDS=1-4470 0.02 OrthoFinder output from all 47 species
Solyc06g076930.2.1 ATPDR3, PDR3,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 872 1024
IPR029481 ABC_trans_N 95 146
IPR003439 ABC_transporter-like_ATP-bd 171 352
IPR013525 ABC_2_trans 506 718
IPR013525 ABC_2_trans 1169 1383
IPR013581 PDR_assoc 723 788
No external refs found!