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Aliases : ABO5, Zm00001e024924
Description : ABO5 mitochondrial RNA splicing factor
Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e024924_P002 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G51965 | ABO5 | ABA Overly-Sensitive 5 | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g012822 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g081393 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g04436 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09293 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g14238 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.08G062900.1 | Ceric.08G062900 | mitochondrial RNA splicing factor *(ABO5) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.12G079300.1 | Ceric.12G079300 | not classified & original description: pacid=50601573... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g24980 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12116 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g13340.1 | ABO5, LOC_Os02g13340 | ABO5 mitochondrial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
| MA_90107g0010 | No alias | Pentatricopeptide repeat-containing protein At1g05600... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g121110.3.1 | ABO5, Solyc03g121110 | ABO5 mitochondrial RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g04254 | No alias | mitochondrial RNA splicing factor *(ABO5) & original... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| CC | GO:0018995 | host cellular component | IEP | HCCA |
| CC | GO:0033643 | host cell part | IEP | HCCA |
| CC | GO:0033646 | host intracellular part | IEP | HCCA |
| CC | GO:0033647 | host intracellular organelle | IEP | HCCA |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | HCCA |
| CC | GO:0042025 | host cell nucleus | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 454 | 487 |
| IPR002885 | Pentatricopeptide_repeat | 184 | 213 |
| IPR002885 | Pentatricopeptide_repeat | 357 | 382 |
| IPR002885 | Pentatricopeptide_repeat | 392 | 421 |
| IPR002885 | Pentatricopeptide_repeat | 217 | 261 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 563 | 606 |
| IPR002885 | Pentatricopeptide_repeat | 287 | 333 |
| No external refs found! |