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  5. Zm00001e024922_P001

Zm00001e024922_P001 (PAP(IV), nPAP, Zm00001e024922)


Aliases : PAP(IV), nPAP, Zm00001e024922

Description : poly(A) RNA polymerase


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024922_P001

Target Alias Description ECC score Gene Family Method Actions
Als_g33647 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26471.t1 PAPS2, Aspi01Gene26471 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26473.t1 PAPS2, Aspi01Gene26473 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26481.t1 PAPS2, Aspi01Gene26481 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26482.t1 PAPS2, Aspi01Gene26482 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24756 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.07 OrthoFinder output from all 47 species
LOC_Os02g13400.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
LOC_Os06g21470.1 PAPS1, LOC_Os06g21470 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os07g48890.1 PAPS3, LOC_Os07g48890 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Mp7g10140.1 PAPS1 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Msp_g15940 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08646 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Smo169728 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEP HCCA
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 21 365
IPR002934 Polymerase_NTP_transf_dom 94 166
IPR007010 PolA_pol_RNA-bd_dom 427 499
IPR007010 PolA_pol_RNA-bd_dom 368 425
No external refs found!