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  5. Zm00001e024608_P001

Zm00001e024608_P001 (LRD2, LACS2, Zm00001e024608)


Aliases : LRD2, LACS2, Zm00001e024608

Description : Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana (sp|q9xia9|lacs2_arath : 891.0) & Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond(50.6.2 : 450.8)


Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024608_P001
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00113600 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00114270 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G49430 LRD2, LACS2 long-chain acyl-CoA synthetase 2 0.14 OrthoFinder output from all 47 species
AT2G47240 CER8, LACS1 AMP-dependent synthetase and ligase family protein 0.09 OrthoFinder output from all 47 species
AT2G47245 No alias No description available 0.02 OrthoFinder output from all 47 species
Adi_g114074 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aev_g04110 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Ala_g09619 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Aop_g06527 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aop_g14139 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33532.t1 LACS4, Aspi01Gene33532 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0060.g034812 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.24G023000.1 LACS4, Ceric.24G023000 EC_6.2 ligase forming carbon-sulfur bond & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.173 ATLACS7, LACS7 Long chain acyl-CoA synthetase 7, peroxisomal... 0.02 OrthoFinder output from all 47 species
Cre03.g182050 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre12.g507400 LACS6, ATLACS6 Lipid metabolism.lipid degradation.fatty acid... 0.02 OrthoFinder output from all 47 species
Dac_g11566 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Dcu_g08877 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.08 OrthoFinder output from all 47 species
Dde_g01611 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.07 OrthoFinder output from all 47 species
Ehy_g08481 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028155001 CER8, LACS1 Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01031892001 LRD2, LACS2 Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_09959 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_18621 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_32132 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Gb_32723 LACS6, ATLACS6 Long chain acyl-CoA synthetase 6, peroxisomal... 0.02 OrthoFinder output from all 47 species
LOC_Os01g48910.2 LACS4, LOC_Os01g48910 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os05g04170.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
LOC_Os11g35400.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Len_g16036 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
MA_10432761g0010 LACS4 Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10435049g0010 LACS6, ATLACS6 Long chain acyl-CoA synthetase 7, peroxisomal... 0.02 OrthoFinder output from all 47 species
MA_839621g0010 No alias Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g09778 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Msp_g11320 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Msp_g20518 ATLACS7, LACS7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03105 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g03690 ATLACS7, LACS7 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Pnu_g25755 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species
Pnu_g31368 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g17117 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.05 OrthoFinder output from all 47 species
Sam_g15770 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Sam_g16833 No alias EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Solyc01g079240.3.1 CER8, LACS1,... Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Solyc01g109180.4.1 LRD2, LACS2,... Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species
Solyc09g075770.3.1 LACS6, ATLACS6,... peroxisomal long-chain acyl-CoA synthetase 0.06 OrthoFinder output from all 47 species
Spa_g26451 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.04 OrthoFinder output from all 47 species
Spa_g40891 LACS6, ATLACS6 EC_6.2 ligase forming carbon-sulfur bond & original... 0.02 OrthoFinder output from all 47 species
Spa_g47685 LACS4 EC_6.2 ligase forming carbon-sulfur bond & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 66 524
No external refs found!