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Aliases : EMB2453, ATPPR5, Zm00001e023883
Description : Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays (sp|a7ln87|ppr5_maize : 900.0)
Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e023883_P001 | |
| Cluster | HCCA: Cluster_114 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G06430 | EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G39620 | EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| AT5G48730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g05989 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene36337.t1 | EMB2453, ATPPR5,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0174.g055903 | EMB2453, ATPPR5 | not classified & original description: CDS=133-1563 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z174800.1 | Ceric.1Z174800 | not classified & original description: pacid=50628243... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g02809 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g08087 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017677001 | EMB2750 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.12 | OrthoFinder output from all 47 species | |
| GSVIVT01022204001 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01028689001 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01032162001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_00230 | No alias | Pentatricopeptide repeat-containing protein At3g06430,... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_36199 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_37344 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_38049 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g02430.1 | LOC_Os03g02430 | Pentatricopeptide repeat-containing protein At3g53170... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g07550.1 | LOC_Os06g07550 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g27398 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g07398 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g16720 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g30371 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11535 | EMB2453, ATPPR5 | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0080.g017959 | EMB2453, ATPPR5 | not classified & original description: CDS=1-1101 | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g39146 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo135826 | No alias | Pentatricopeptide repeat-containing protein At4g39620,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g006500.4.1 | Solyc01g006500 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc01g057200.4.1 | EMB2750, Solyc01g057200 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc04g054270.4.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc08g045780.4.1 | Solyc08g045780 | Pentatricopeptide repeat-containing protein At3g53170... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc12g098990.2.1 | EMB2750, Solyc12g098990 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | HCCA |
| MF | GO:0004784 | superoxide dismutase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006801 | superoxide metabolic process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | HCCA |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |