1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e023246_P001

Zm00001e023246_P001 (Zm00001e023246)


Aliases : Zm00001e023246

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 500.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023246_P001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g114669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39387 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32427 No alias regulatory protein *(RLD) of gravity sensing & original... 0.04 OrthoFinder output from all 47 species
Aop_g33314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene52034.t1 Aspi01Gene52034 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15359 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.33G007900.1 Ceric.33G007900 not classified & original description: pacid=50607060... 0.02 OrthoFinder output from all 47 species
Dac_g11534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g30699 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Gb_31523 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
LOC_Os02g45980.1 LOC_Os02g45980 PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
LOC_Os04g58960.1 PRAF1, LOC_Os04g58960 PH, RCC1 and FYVE domains-containing protein 1... 0.08 OrthoFinder output from all 47 species
LOC_Os05g01610.1 PRAF1, LOC_Os05g01610 PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
LOC_Os05g31920.2 LOC_Os05g31920 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Len_g08335 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g19874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g08372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo430894 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Solyc03g005590.2.1 Solyc03g005590 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Solyc12g099740.2.1 Solyc12g099740 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001849 PH_domain 20 126
IPR000408 Reg_chr_condens 487 535
IPR000408 Reg_chr_condens 318 366
IPR000408 Reg_chr_condens 425 473
IPR000408 Reg_chr_condens 539 589
IPR000408 Reg_chr_condens 592 641
IPR000408 Reg_chr_condens 369 420
IPR013591 Brevis_radix_dom 1007 1059
IPR000306 Znf_FYVE 650 711
No external refs found!