Zm00001e022880_P001 (ATRAB8D, ATRABE1B,...)

Aliases : ATRAB8D, ATRABE1B, RABE1b, Zm00001e022880

Description : EF-Tu translation elongation factor

Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e022880_P001
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AT4G02930	No alias	GTP binding Elongation factor Tu family protein	0.04	OrthoFinder output from all 47 species
AT4G20360	ATRAB8D, ATRABE1B, RABE1b	RAB GTPase homolog E1B	0.11	OrthoFinder output from all 47 species
Adi_g075285	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Aev_g21041	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Aev_g27656	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Als_g08146	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.08	OrthoFinder output from all 47 species
Als_g08147	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Als_g09356	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Als_g23756	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Aob_g15070	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Aop_g25435	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.06	OrthoFinder output from all 47 species
Aspi01Gene22120.t1	ATRAB8D,...	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene36272.t1	ATRAB8D,...	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0292.g063375	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Cba_g06908	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Cba_g07152	No alias	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Cba_g22191	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Cba_g70878	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Ceric.10G078000.1	ATRAB8D,...	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Ceric.33G051100.1	Ceric.33G051100	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.40	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
Dac_g02773	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Dac_g08520	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g08765	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Dde_g18792	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Dde_g26438	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g09796	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Gb_29040	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.06	OrthoFinder output from all 47 species
LOC_Os02g38210.1	ATRAB8D,...	EF-Tu translation elongation factor	0.07	OrthoFinder output from all 47 species
Len_g22334	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Len_g31034	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Len_g39684	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Len_g41947	ATRAB8D, ATRABE1B, RABE1b	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_58335g0010	No alias	EF-Tu translation elongation factor	0.02	OrthoFinder output from all 47 species
MA_942991g0010	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.06	OrthoFinder output from all 47 species
Mp1g03870.1	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.19	OrthoFinder output from all 47 species
Msp_g05929	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g01170	No alias	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g13791	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Nbi_g14071	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Pir_g05476	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g24392	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g24394	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g34741	ATRAB8D, ATRABE1B, RABE1b	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g42943	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015523	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Sam_g07638	No alias	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Smo233481	ATRAB8D, ATRABE1B, RABE1b	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc03g112150.1.1	ATRAB8D,...	EF-Tu translation elongation factor	0.06	OrthoFinder output from all 47 species
Solyc06g071790.3.1	ATRAB8D,...	EF-Tu translation elongation factor	0.1	OrthoFinder output from all 47 species
Solyc09g073000.3.1	Solyc09g073000	EF-Tu translation elongation factor	0.02	OrthoFinder output from all 47 species
Spa_g10864	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Spa_g10865	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Spa_g10866	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Spa_g18775	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50677	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Tin_g03978	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Tin_g05984	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e011649_P001	Zm00001e011649	EF-Tu translation elongation factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004161	EFTu-like_2	292	360
IPR000795	T_Tr_GTP-bd_dom	67	268
IPR004160	Transl_elong_EFTu/EF1A_C	365	464

External Links

No external refs found!

Zm00001e022880_P001 (ATRAB8D, ATRABE1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation