Mp4g20290.1


Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 288.0)


Gene families : OG_01_0001265 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001265_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g20290.1
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.04 Archaeplastida
AT3G56030 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.05 Archaeplastida
Pp3c3_2440V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 LandPlants
AT3G56030 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
LOC_Os07g48850.2 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
MA_9347352g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.01 LandPlants
Pp3c3_2440V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0042802 identical protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 716 763
IPR002885 Pentatricopeptide_repeat 298 345
IPR002885 Pentatricopeptide_repeat 368 416
IPR002885 Pentatricopeptide_repeat 577 625
IPR002885 Pentatricopeptide_repeat 476 521
IPR002885 Pentatricopeptide_repeat 235 263
IPR002885 Pentatricopeptide_repeat 440 469
IPR011717 TPR-4 793 812
IPR002885 Pentatricopeptide_repeat 644 675
IPR002885 Pentatricopeptide_repeat 542 570
IPR002885 Pentatricopeptide_repeat 685 710
No external refs found!