Zm00001e022452_P003 (PTB1, PTB, ATPTB1,...)

Aliases : PTB1, PTB, ATPTB1, Zm00001e022452

Description : PTB-type RNA splicing factor

Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e022452_P003

Target	Alias	Description	ECC score	Gene Family Method
Aev_g27652	PTB2, ATPTB2	RNA splicing factor *(PTB) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g56769	PTB2, ATPTB2	RNA splicing factor *(PTB) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os08g33830.1	PTB1, PTB,...	PTB-type RNA splicing factor	0.04	OrthoFinder output from all 47 species
Lfl_g06615	PTB2, ATPTB2	RNA splicing factor *(PTB) & original description: none	0.02	OrthoFinder output from all 47 species
Mp7g10030.1	PTB2, ATPTB2	PTB-type RNA splicing factor	0.03	OrthoFinder output from all 47 species
Spa_g05343	PTB2, ATPTB2	RNA splicing factor *(PTB) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021790	PTBP1-like_RRM2	246	324
IPR000504	RRM_dom	21	71

External Links

No external refs found!