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  5. Zm00001e022330_P003

Zm00001e022330_P003 (Zm00001e022330)


Aliases : Zm00001e022330

Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana (sp|q84th4|sr45a_arath : 97.8)


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022330_P003

Target Alias Description ECC score Gene Family Method Actions
AT4G35785 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g013116 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g043406 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059705 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23958 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32618 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52073 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02259 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21831 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g28728 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g29650.1 LOC_Os08g29650 Serine/arginine-rich splicing factor SR45a... 0.03 OrthoFinder output from all 47 species
Nbi_g08755 No alias splicing factor *(SR45a) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g35606 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27155 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31276 No alias splicing factor *(SR45a) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 121 190
No external refs found!