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  5. Zm00001e022328_P001

Zm00001e022328_P001 (Zm00001e022328)


Aliases : Zm00001e022328

Description : associated component HDC1/Rxt3 of histone deacetylase machineries


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022328_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g011656 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Als_g19270 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Aob_g03580 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47293.t1 Aspi01Gene47293 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.1Z065200.1 Ceric.1Z065200 associated component *(HDC1) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
LOC_Os07g29450.1 LOC_Os07g29450 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
MA_18805g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g25492 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Nbi_g03166 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ppi_g03202 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Tin_g13819 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 483 525
No external refs found!