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  5. Zm00001e022237_P002

Zm00001e022237_P002 (HDA6, RTS1, ATHDA6,...)


Aliases : HDA6, RTS1, ATHDA6, SIL1, RPD3B, AXE1, Zm00001e022237

Description : class-I histone deacetylase


Gene families : OG0000827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022237_P002
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Ala_g08155 HDA09, HDA9 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Ala_g14039 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001307.14 HDA09, HDA9 Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase... 0.01 OrthoFinder output from all 47 species
Dac_g07623 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Dcu_g12683 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
LOC_Os08g25570.1 HDA6, RTS1,... class-I histone deacetylase 0.04 OrthoFinder output from all 47 species
Len_g18001 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
MA_10427274g0010 HDA6, RTS1,... class-I histone deacetylase 0.02 OrthoFinder output from all 47 species
Msp_g08390 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ore_g00364 HDA09, HDA9 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Pir_g43104 ATHDA19, HDA1,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 41 330
No external refs found!