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  5. Zm00001e021916_P002

Zm00001e021916_P002 (APUM6, PUM6, Zm00001e021916)


Aliases : APUM6, PUM6, Zm00001e021916

Description : Pumilio homolog 5 OS=Arabidopsis thaliana (sp|q9ljx4|pum5_arath : 595.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021916_P002
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.03 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110047 PUM5, APUM5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04043 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Ore_g02142 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05799 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27289 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c8_2770V3.1 PUM1, APUM1, Pp3c8_2770 pumilio 1 0.01 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.02 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc06g005670.4.1 PUM3, APUM3,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 781 810
IPR001313 Pumilio_RNA-bd_rpt 970 1000
IPR001313 Pumilio_RNA-bd_rpt 926 951
IPR001313 Pumilio_RNA-bd_rpt 854 883
IPR001313 Pumilio_RNA-bd_rpt 709 740
IPR001313 Pumilio_RNA-bd_rpt 890 922
IPR001313 Pumilio_RNA-bd_rpt 819 843
IPR001313 Pumilio_RNA-bd_rpt 745 777
No external refs found!