Aliases : AtcpRRF, HFP108, cpRRF, RRF, Zm00001e021862
Description : RRF translation ribosome recycling factor
Gene families : OG0006870 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006870_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e021862_P002 | |
Cluster | HCCA: Cluster_114 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00103p00070570 | AtcpRRF, HFP108,... | Protein biosynthesis.organelle translation... | 0.08 | OrthoFinder output from all 47 species | |
AT3G63190 | AtcpRRF, HFP108,... | ribosome recycling factor, chloroplast precursor | 0.2 | OrthoFinder output from all 47 species | |
Adi_g007469 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g21988 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g21989 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g02938 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g23021 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g05774 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.25G011000.1 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Cre03.g156050 | AtcpRRF, HFP108,... | Protein biosynthesis.organelle translation... | 0.08 | OrthoFinder output from all 47 species | |
Dac_g03594 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dde_g00377 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01001148001 | AtcpRRF, HFP108,... | Protein biosynthesis.organelle translation... | 0.05 | OrthoFinder output from all 47 species | |
Gb_31542 | AtcpRRF, HFP108,... | RRF translation ribosome recycling factor | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os07g38300.1 | AtcpRRF, HFP108,... | RRF translation ribosome recycling factor | 0.23 | OrthoFinder output from all 47 species | |
Len_g47851 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.08 | OrthoFinder output from all 47 species | |
Lfl_g05872 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Mp5g14000.1 | AtcpRRF, HFP108,... | RRF translation ribosome recycling factor | 0.12 | OrthoFinder output from all 47 species | |
Msp_g11460 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g28974 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.08 | OrthoFinder output from all 47 species | |
Ore_g04942 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.05 | OrthoFinder output from all 47 species | |
Pir_g48097 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g08783 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g10744 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.08 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0014.g006320 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g15107 | No alias | translation ribosome recycling factor *(RRF) & original... | 0.04 | OrthoFinder output from all 47 species | |
Solyc09g065270.3.1 | AtcpRRF, HFP108,... | RRF translation ribosome recycling factor | 0.15 | OrthoFinder output from all 47 species | |
Spa_g44127 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g00796 | AtcpRRF, HFP108,... | translation ribosome recycling factor *(RRF) & original... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
CC | GO:0048500 | signal recognition particle | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051668 | localization within membrane | IEP | HCCA |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR023584 | Ribosome_recyc_fac_dom | 145 | 307 |
No external refs found! |