Zm00001e021657_P003 (Zm00001e021657)

Aliases : Zm00001e021657

Description : chromatin remodeling factor (Rad5). chromatin remodeling factor (Ris1)

Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e021657_P003
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AT1G50410	No alias	SNF2 domain-containing protein / helicase...	0.02	OrthoFinder output from all 47 species
Adi_g011606	No alias	chromatin remodeling factor *(Ris1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03860	EDA16	chromatin remodeling factor *(Ris1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02925	EDA16	chromatin remodeling factor *(Ris1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.28G036100.1	Ceric.28G036100	chromatin remodeling factor *(Ris1) & original...	0.02	OrthoFinder output from all 47 species
Cre01.g046237	No alias	Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01034370001	No alias	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
LOC_Os08g08220.1	LOC_Os08g08220	chromatin remodeling factor (Rad5). chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Lfl_g35158	No alias	chromatin remodeling factor *(Ris1) & original description: none	0.02	OrthoFinder output from all 47 species
Mp8g05230.1	No alias	chromatin remodeling factor (Ris1)	0.02	OrthoFinder output from all 47 species
Pir_g17386	No alias	chromatin remodeling factor *(Ris1) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	303	720
IPR001650	Helicase_C	880	975

External Links

No external refs found!