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  5. Zm00001e021483_P001

Zm00001e021483_P001 (SHM4, Zm00001e021483)


Aliases : SHM4, Zm00001e021483

Description : serine hydroxymethyltransferase. serine hydroxymethyltransferase


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021483_P001
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00262120 SHM4,... Amino acid metabolism.biosynthesis.serine... 0.09 OrthoFinder output from all 47 species
AT4G13930 SHM4 serine hydroxymethyltransferase 4 0.12 OrthoFinder output from all 47 species
AT5G26780 SHM2 serine hydroxymethyltransferase 2 0.05 OrthoFinder output from all 47 species
Als_g20779 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aop_g08717 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene72159.t1 SHM4, Aspi01Gene72159 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g07101 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.16G071800.1 SHM4, Ceric.16G071800 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Cre06.g293950 SHM4 Amino acid metabolism.biosynthesis.serine... 0.08 OrthoFinder output from all 47 species
Dac_g02790 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Dcu_g23927 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
GSVIVT01009226001 STM, SHM1, SHMT1 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.15 OrthoFinder output from all 47 species
GSVIVT01021046001 SHM4 Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os11g26860.1 SHM4, LOC_Os11g26860 Serine hydroxymethyltransferase 4 OS=Arabidopsis... 0.22 OrthoFinder output from all 47 species
Len_g24771 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Lfl_g01520 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
MA_11357g0010 SHM4 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.06 OrthoFinder output from all 47 species
Msp_g00555 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Nbi_g04285 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
Nbi_g39921 AtSHMT3, SHM3 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ore_g03183 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ore_g20456 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Pir_g01613 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Pp3c15_6270V3.1 SHM4, Pp3c15_6270 serine hydroxymethyltransferase 4 0.02 OrthoFinder output from all 47 species
Ppi_g13186 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Smo166496 SHM4 Amino acid metabolism.biosynthesis.serine... 0.1 OrthoFinder output from all 47 species
Solyc05g053810.3.1 SHM4, Solyc05g053810 serine hydroxymethyltransferase. serine hydroxymethyltransferase 0.09 OrthoFinder output from all 47 species
Spa_g04332 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
Spa_g30099 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Tin_g12386 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 69 466
No external refs found!