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  5. Zm00001e020614_P001

Zm00001e020614_P001 (emb1796, Zm00001e020614)


Aliases : emb1796, Zm00001e020614

Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana (sp|q9m3a8|pp273_arath : 501.0)


Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020614_P001
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Gb_33747 emb1796 Pentatricopeptide repeat-containing protein At3g49240,... 0.07 OrthoFinder output from all 47 species
Gb_33759 GRP23 Pentatricopeptide repeat-containing protein At3g49240,... 0.06 OrthoFinder output from all 47 species
LOC_Os05g30240.1 GRP23, LOC_Os05g30240 Pentatricopeptide repeat-containing protein At1g10270... 0.08 OrthoFinder output from all 47 species
LOC_Os11g24570.1 emb1796, LOC_Os11g24570 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
MA_9161715g0010 emb1796 Pentatricopeptide repeat-containing protein At1g10270... 0.04 OrthoFinder output from all 47 species
Solyc01g103160.3.1 GRP23, Solyc01g103160 Pentatricopeptide repeat-containing protein At1g10270... 0.04 OrthoFinder output from all 47 species
Solyc03g083280.4.1 emb1796, Solyc03g083280 Pentatricopeptide repeat-containing protein At3g49240,... 0.06 OrthoFinder output from all 47 species
Zm00001e004732_P001 GRP23, Zm00001e004732 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 460 507
IPR002885 Pentatricopeptide_repeat 390 438
IPR002885 Pentatricopeptide_repeat 281 310
IPR002885 Pentatricopeptide_repeat 248 271
IPR002885 Pentatricopeptide_repeat 208 237
IPR002885 Pentatricopeptide_repeat 359 388
IPR002885 Pentatricopeptide_repeat 129 180
IPR002885 Pentatricopeptide_repeat 318 343
No external refs found!