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  5. Zm00001e020605_P001

Zm00001e020605_P001 (Zm00001e020605)


Aliases : Zm00001e020605

Description : component CASC3 of RNA quality control Exon Junction complex


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020605_P001

Target Alias Description ECC score Gene Family Method Actions
Adi_g004430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g14440 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Ppi_g32199 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Tin_g04726 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 157 253
No external refs found!