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  5. Zm00001e020452_P002

Zm00001e020452_P002 (Zm00001e020452)


Aliases : Zm00001e020452

Description : DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica (sp|q5zbh5|rh25_orysj : 896.0)


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020452_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G08610 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 OrthoFinder output from all 47 species
Adi_g113790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03197 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000854 No alias not classified & original description: CDS=1-1434 0.03 OrthoFinder output from all 47 species
Dac_g03770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06438 No alias mRNA helicase *(RH31) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g07185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os01g43120.1 LOC_Os01g43120 DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Ore_g45472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01045 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53381 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13628 No alias mRNA helicase *(RH31) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g095740.4.1 Solyc01g095740 DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g07287 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 363 471
IPR011545 DEAD/DEAH_box_helicase_dom 143 320
No external refs found!