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  5. Zm00001e019687_P003

Zm00001e019687_P003 (UBP13, Zm00001e019687)


Aliases : UBP13, Zm00001e019687

Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019687_P003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 UBP13,... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G11910 UBP13 ubiquitin-specific protease 13 0.07 OrthoFinder output from all 47 species
AT5G06600 UBP12 ubiquitin-specific protease 12 0.03 OrthoFinder output from all 47 species
Adi_g058360 UBP13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076953 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109500 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21287 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g19646 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11910 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18908 UBP13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29323 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32969 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04496 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12303 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53263.t2 UBP12, Aspi01Gene53263 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013846 UBP13 deubiquitinase *(UBP12-13) & original description: CDS=177-3623 0.03 OrthoFinder output from all 47 species
Cba_g16251 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17070 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76845 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G025300.1 UBP13, Ceric.13G025300 deubiquitinase *(UBP12-13) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.14G040100.1 UBP12, Ceric.14G040100 deubiquitinase *(UBP12-13) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.24G037500.1 UBP12, Ceric.24G037500 deubiquitinase *(UBP12-13) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.35 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre07.g336200 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08947 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50110 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08217 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g18754 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01034603001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56490.1 UBP13, LOC_Os01g56490 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
LOC_Os07g06950.1 UBP12, LOC_Os07g06950 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
LOC_Os11g36470.1 UBP13, LOC_Os11g36470 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
LOC_Os12g30540.1 UBP12, LOC_Os12g30540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 OrthoFinder output from all 47 species
Len_g10766 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05026 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426331g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
MA_10427483g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 OrthoFinder output from all 47 species
MA_10427483g0020 UBP13 deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
MA_10428769g0010 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 OrthoFinder output from all 47 species
Mp3g15430.1 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Ppi_g16380 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Smo444302 UBP12 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
Solyc05g055090.4.1 UBP12, Solyc05g055090 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Solyc11g006320.2.1 UBP12, Solyc11g006320 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Solyc11g071700.2.1 UBP12, Solyc11g071700 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Spa_g29818 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032871_P004 UBP12, Zm00001e032871 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Zm00001e039540_P003 UBP12, Zm00001e039540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 64 184
IPR029346 USP_C 898 1103
IPR001394 Peptidase_C19_UCH 202 528
IPR024729 USP7_ICP0-binding_dom 636 888
No external refs found!