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  5. Zm00001e019597_P001

Zm00001e019597_P001 (PDF2, Zm00001e019597)


Aliases : PDF2, Zm00001e019597

Description : transcription factor (HD-ZIP IV)


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019597_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00089530 HDG5, HB-7,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00091460 ANL2, AHDP RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT4G00730 ANL2, AHDP Homeobox-leucine zipper family protein / lipid-binding... 0.01 OrthoFinder output from all 47 species
AT4G25530 HDG6, FWA FLOWERING WAGENINGEN 0.03 OrthoFinder output from all 47 species
AT5G52170 HDG7 homeodomain GLABROUS 7 0.02 OrthoFinder output from all 47 species
Aev_g06757 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23646 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25555 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07199 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02216 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15269 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04977 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g57890.1 PDF2, LOC_Os01g57890 transcription factor (HD-ZIP IV) 0.06 OrthoFinder output from all 47 species
LOC_Os09g35760.1 HDG1, HD-GL2-1,... transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Len_g11571 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35701 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13790 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g11149 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25620 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g31588 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g17562 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g035880.1.1 PDF2, Solyc06g035880 transcription factor (HD-ZIP IV) 0.01 OrthoFinder output from all 47 species
Solyc07g041850.3.1 PDF2, Solyc07g041850 transcription factor (HD-ZIP IV) 0.04 OrthoFinder output from all 47 species
Solyc09g015110.2.1 Solyc09g015110 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc12g005830.3.1 PDF2, Solyc12g005830 transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Spa_g51145 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e039947_P001 HDG2, Zm00001e039947 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Zm00001e042218_P002 HDG2, Zm00001e042218 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 281 496
IPR001356 Homeobox_dom 115 166
No external refs found!