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  5. Zm00001e019387_P001

Zm00001e019387_P001 (Zm00001e019387)


Aliases : Zm00001e019387

Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana (sp|q9fld8|pp408_arath : 556.0)


Gene families : OG0008153 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019387_P001
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AT5G39980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g030762 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1721.g106130 No alias plastidial splicing factor *(PDM3) & original... 0.06 OrthoFinder output from all 47 species
Ceric.01G002800.1 Ceric.01G002800 plastidial splicing factor *(PDM3) & original... 0.09 OrthoFinder output from all 47 species
Dac_g06633 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032591001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.09 OrthoFinder output from all 47 species
LOC_Os01g61630.1 LOC_Os01g61630 Pentatricopeptide repeat-containing protein At5g39980,... 0.09 OrthoFinder output from all 47 species
Len_g08163 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
MA_112272g0010 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.03 OrthoFinder output from all 47 species
Msp_g01199 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40651 No alias plastidial splicing factor *(PDM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06106 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g38967 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020543 No alias plastidial splicing factor *(PDM3) & original... 0.03 OrthoFinder output from all 47 species
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.02 OrthoFinder output from all 47 species
Solyc02g087560.1.1 Solyc02g087560 Pentatricopeptide repeat-containing protein At5g39980,... 0.05 OrthoFinder output from all 47 species
Spa_g10723 No alias plastidial splicing factor *(PDM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32610 No alias plastidial splicing factor *(PDM3) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 145 188
IPR002885 Pentatricopeptide_repeat 396 440
IPR002885 Pentatricopeptide_repeat 317 363
IPR002885 Pentatricopeptide_repeat 203 257
IPR002885 Pentatricopeptide_repeat 285 310
IPR002885 Pentatricopeptide_repeat 576 600
IPR002885 Pentatricopeptide_repeat 469 495
IPR002885 Pentatricopeptide_repeat 539 564
No external refs found!