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  5. Zm00001e018409_P001

Zm00001e018409_P001 (CHB4, SWI3C, ATSWI3C,...)


Aliases : CHB4, SWI3C, ATSWI3C, Zm00001e018409

Description : component BAF255/170 of chromatin remodeling complex


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018409_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072490 CHB3, ATSWI3D,... Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.04 OrthoFinder output from all 47 species
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.04 OrthoFinder output from all 47 species
Adi_g014216 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ala_g02056 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cba_g14378 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.03G090000.1 CHB4, SWI3C,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Ceric.17G074300.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.18G048000.1 SWI3A, CHB1,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ceric.22G071000.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.28G011200.1 CHB2, SWI3B,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cre08.g364050 CHB3, ATSWI3D Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Ehy_g09982 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01008831001 CHB4, SWI3C, ATSWI3C Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01031951001 CHB3, ATSWI3D Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Gb_22023 CHB2, SWI3B, ATSWI3B component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g10060.1 CHB2, SWI3B,... component BAF255/170 of chromatin remodeling complex 0.07 OrthoFinder output from all 47 species
LOC_Os04g40420.1 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.06 OrthoFinder output from all 47 species
LOC_Os12g07730.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.07 OrthoFinder output from all 47 species
Len_g07560 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
MA_10426836g0010 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
MA_10432371g0010 CHB3, ATSWI3D component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
MA_10432371g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Pir_g16764 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Pnu_g13567 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Pnu_g27615 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ppi_g01335 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006350 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Sam_g10332 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Sam_g52721 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Solyc01g109510.3.1 CHB3, ATSWI3D,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Solyc06g060120.3.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Spa_g06724 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Spa_g15980 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Tin_g04137 CHB3, ATSWI3D SMARCC component *(SWI3) of chromaTin remodeling complex... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 190 276
IPR001005 SANT/Myb 421 462
IPR032451 SMARCC_C 583 657
No external refs found!