Zm00001e018161_P001 (PUB13, ATPUB13, Zm00001e018161)

Aliases : PUB13, ATPUB13, Zm00001e018161

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e018161_P001
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00063p00200790	evm_27.TU.AmTr_v1...	U-box domain-containing protein 11 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Als_g13982	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g03476	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01129.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene28659.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.19G008100.1	PUB25, Ceric.19G008100	not classified & original description: pacid=50576706...	0.03	OrthoFinder output from all 47 species
Ceric.1Z057600.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.34G048100.1	Ceric.34G048100	E3 ubiquitin ligase & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g02154	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g03925	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02285	ATPUB17, PUB17	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
LOC_Os12g38210.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
MA_84321g0010	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Pnu_g33917	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19747	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g25175	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g28822	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc05g005670.1.1	Solyc05g005670	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0004411	homogentisate 1,2-dioxygenase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006558	L-phenylalanine metabolic process	IEP	HCCA
BP	GO:0006559	L-phenylalanine catabolic process	IEP	HCCA
BP	GO:0006570	tyrosine metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	HCCA
BP	GO:1902222	erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	282	352
IPR000225	Armadillo	409	447
IPR000225	Armadillo	492	529

External Links

No external refs found!

Zm00001e018161_P001 (PUB13, ATPUB13, Zm00001e018161)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation