Zm00001e018082_P001 (SNL3, ATSIN3, SIN3,...)

Aliases : SNL3, ATSIN3, SIN3, Zm00001e018082

Description : Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana (sp|o48686|snl3_arath : 258.0)

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e018082_P001

Target	Alias	Description	ECC score	Gene Family Method
Cba_g77516	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Dcu_g18941	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Msp_g24890	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Pir_g18041	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	129	173
IPR003822	PAH	46	90
IPR013194	HDAC_interact_dom	851	937

External Links

No external refs found!