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  5. Zm00001e017983_P001

Zm00001e017983_P001 (Zm00001e017983)


Aliases : Zm00001e017983

Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 263.0)


Gene families : OG0017010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0017010_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e017983_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01021547001 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.04 OrthoFinder output from all 47 species
Gb_28559 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 619 644
IPR002885 Pentatricopeptide_repeat 342 370
IPR002885 Pentatricopeptide_repeat 445 475
IPR002885 Pentatricopeptide_repeat 508 540
IPR002885 Pentatricopeptide_repeat 299 329
IPR002885 Pentatricopeptide_repeat 372 421
IPR002885 Pentatricopeptide_repeat 547 595
IPR002885 Pentatricopeptide_repeat 231 279
IPR002885 Pentatricopeptide_repeat 149 207
No external refs found!